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552853 Entries,   Last Update: 19-Apr-2014


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Examples of molecular surface
For all pdb entries, molecular surfaces are generated for individual subunits of proteins and the complex of proteins. In addition, when double strands DNA is included in the entry, a molecular surface for each dsDNA is also stored.
When multiple models are stored in PDB, molecular surfaces for all the models are generated.


Constructed by Kinoshita, Kengo (The Institute of Medical Science, The University of Tokyo) and Nakamura, Haruki (Institute for Protein Research, Osaka University), collaborated with Information and Mathematical Science Laboratory, Inc. The development of this database is supported by BIRD-JST.


Related sites
Web server to calculate the molecular surface and the electrostatic potential for the user uploaded file.
Structure-based function prediction server.